Analysing

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get_phase_times

 get_phase_times (model)

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get_phase_length

 get_phase_length (model, phase)

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get_phase_lengths

 get_phase_lengths (model)

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adjust_for_phases

 adjust_for_phases (series_object, model)

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get_only_gc_opening

 get_only_gc_opening (df)

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get_pearson

 get_pearson (df)

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get_solution_dfs

 get_solution_dfs (light, atpase_constrained, starch_knockout,
                   outputs_path, cutoff_flux=1e-08)

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check_for_missing

 check_for_missing (reaction_list, map_path)

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get_escher_map

 get_escher_map (model_solution, map='inputs/map.json',
                 json_model='models/4_stage_GC.json', **kwargs)

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get_difference_biggest_to_smallest

 get_difference_biggest_to_smallest (row)

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replace_with_1_0

 replace_with_1_0 (value, threshold)

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get_adjacency

 get_adjacency (df, threshold)

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get_percentage_difference_df

 get_percentage_difference_df (pfba_df, averages_df)

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get_difference_map

 get_difference_map (percentage_difference_df, map_path, json_model)

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get_pfba_pathways_map

 get_pfba_pathways_map (subgraph_list, map_path, json_model)